On October 1, 1962, N.S. Khrushchev met with a delegation from India’s Gandhi Peace Foundation to discuss nuclear disarmament and ongoing arms negotiations. The delegation presented concerns about nuclear testing and urged the Soviet Union to take unilateral steps toward disarmament. Khrushchev responded that while the USSR was willing to sign an agreement to halt nuclear testing, the United States' refusal to accept verification measures and continued military expansion made such an agreement difficult. The conversation also covered US foreign policy, Soviet-Indian relations, and global security issues.

By late January, the negotiations with Turkey were bogged down, with Defense Minister Sancar asking for a Turkish military presence on the Polaris submarines as well as delivery of nuclear weapons for the F-100 Super Sabres before the Jupiters were replaced. Without a formal agreement on the Jupiters, the U.S. government held back from a decision on another matter: the delivery of F-104G fighter-bombers. Nevertheless, Defense Department officials approved a decision to “provide first available aircraft” in April 1963, which was necessary to authorize the Air Force’s “preliminary preparatory actions.” The U.S. would preserve its “bargaining position” by informing Turkey in writing that an “accelerated delivery date will become firm upon satisfactory conclusion of current US/Turkey negotiations.”

This message conveyed several decisions that McNamara had detailed in a memorandum on “The Replacement of Jupiter and Related Matters.” One Sergeant missile battalion would be deployed in Italy to replace Corporal missiles. The U.S. would not transfer to Italy “operational responsibilities” for nuclear weapons currently deployed to the Southern European Task Force [SETAF]. The U.S. would not deploy Pershing missiles to Italy. Planning would begin for the assignment of three Polaris submarines to the Mediterranean beginning April 1, 1963. Finally, plans would be made to deliver 14 104-G’s to Turkey during April 1963.

Seymour Weiss would push back against any efforts to remove the Jupiters, but he and others realized that President Kennedy had a “keen interest” in the matter and that Secretary of Defense McNamara had ordered that action be taken (assigning his General Counsel John McNaughton to take the lead). Nevertheless Weiss and Assistant Secretary of State William Tyler presented Secretary of State Rusk with a memorandum making the case against action on the Jupiters or at least postponing their removal until a “later time.” Paralleling arguments made during the crisis by Ambassadors Hare and Reinhardt, Tyler pointed to the “symbolic and psychological importance” of the Jupiter deployments. While Tyler noted parenthetically that the Italians had “given indications of a disposition to work toward the eventual removal of the Jupiters,” the U.S. could not phase them out “without general Alliance agreement,” including Italy and Turkey’s consent, “unless we are prepared to lay ourselves open to the charge of abrogation of specific or implied agreements.” Rusk was in the know on the secret deal, but his reference to a “later time” was consistent with it and signing the memo would have placated Tyler and Weiss.